Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs3781584 chr11:68200444 G/A 1.61E-7 494 29.63 33.6 24.58 KM Plot
PRAD rs3792795 chr5:150403802 C/T 3.39E-6 494 31.27 30.27 15.77 KM Plot
PRAD rs3793369 chr8:144664335 G/A 7.38E-5 492 30.77 32.23 33.58 KM Plot
PRAD rs3793371 chr8:144664299 C/T 5.33E-8 494 30.75 32.23 22.87 KM Plot
PRAD rs3793372 chr8:144664233 A/C 7.74E-5 490 30.77 32.23 33.58 KM Plot
PRAD rs3795431 chr1:31850058 T/A 8.18E-6 493 22.87 31.3 30.93 KM Plot
PRAD rs3801035 chr7:6735534 C/T 2.31E-11 494 31.07 27.77 38.33 KM Plot
PRAD rs3805948 chr6:42954492 C/T 7.46E-5 494 30.73 32.18 24.13 KM Plot
PRAD rs3805949 chr6:42954429 G/A 7.7E-5 493 30.53 32.18 24.13 KM Plot
PRAD rs3810602 chr22:21358051 A/G 8.7E-5 476 31.27 28.43 30.4 KM Plot
PRAD rs3813198 chr1:1158326 G/A 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs3813199 chr1:1158277 A/G 1.06E-7 494 13.73 30.73 31.27 KM Plot
PRAD rs3824225 chr8:104036184 C/T 2.43E-12 487 31.23 28.47 18.15 KM Plot
PRAD rs3824228 chr8:104033841 C/A 7.33E-5 483 31.18 28.63 18.15 KM Plot
PRAD rs3826717 chr19:49979893 A/G 7.19E-7 478 30.3 33.3 24.25 KM Plot